1- Linalool-rich essential oil of Zataria multiflora Boiss. (Lamiaceae) .Abdolali Mohagheghzadeh,  Mohammad Reza Shams Ardekan, A. Ghannadi. , Flavour and Fragrance Journal, 15, 119-22 (2000)

2- Formation of glycyrrhizin and biotransformation of terpenes and related compounds by in vitro cultures of glycyrrhiza glabra L. (Papilionaceae).  M.R. Shams Ardekani- A. Mohagheghzadeh- A. Ghannadi- A. Barati, Future Trends in Phytochemistry. Gargnano(italy) May 22-5 (2002)

3- Volatile constituents from the aerial parts of Verbena officinalis L. (vervain),                               M. R. Shams Ardekani, M. Mosadegh, A. Shafaati, Iranian Journal of Pharmaceutical Research, Vol. 2, No. 1, 2003, 39-42

4- Characterization of volatile constituents from Aerial ports of Varthemia persica DC CVor. Persica, Iranian Journal of Pharmaceutical Research, N. Ghasemi, G. Asghari, M. R. Shams Ardekani,        A. Siahpoush Vol. 3, No. 4, 2003,  241-243

5- Composition of essential oil of Artemisia persica Boiss. from Iran, O. Sadeghpour, G. Asghari, M. R. Shams Ardekani, Iranian Journal of Pharmaceutical Research, Vol.2, No.4, 2003, page 65-67

6- The antioxidant activity of the essential oils of Iranian conifers on red blood cell. S.Asgary; M.R. Shams Ardekani; G.H. Naderi; A.Emami; S.Aslani; M.Gharipour; Isfahan Cardiovascular Research Center. Iran. 2003

7- Biotransformation of terpenes and related componds by suspension culture of Glycyrrhiza glabra L.(papillonaceu)

Mohammad Reza Shams Ardekani ; Alireza Ghannadi ; Parmis Badr and Abdolali Mohagheghzadeh. Flavor and Fragrace journal. No:19. 2004

8- Determination of  flavonolignan of dried fruits of Silybum marianum L.

T.Hasanloo; R.A.Khavari-Nejad; E.Majidi; S.A.Ziai ; M.R.Shams Ardekani. Journal of Medicinal Plants. 4(1) : 25-32- 2004.

9- Rosmarinic acid from Zatarin multiflora tops and in vitro cultures

Abdolali Mohagheghzade ; Mohammad Reza Shams Ardekani ; Alireza Ghannadi ; M.Minaeian. Fitoterpia. No:75 .  2004 .  PP: 315-321

10- The School of traditonal Iranian medicine , the definition, origin and advantages.

Mohsen Naseri ; Mohammad Reza Shams Ardekani

Jornal of the international society for the history of Islam medicine Vol: 3, No:6 . 2004.  PP:17-21

11-Main phenolic compound of petals of Echium menum Fisch. And C.A.Mey, A Famous medicinal plant of Iran.

Mitra Mehrabani ; Nasrollah Ghassemi ; Ebrahim Sajjadi , Alireza Ghannadi; Mohammad Reza Shams Ardekani. DARU , Vol:13  No: 2 . 2005.  PP: 65-69

12- Analysis of flavonolignans in dried fruts of Silybum marianum(L.) Gaertn from Iran, Tahereh hasanloo; Ramezan Ali Khavari – Nejad; Eslam majid -Mohammad Reza Shams Ardekani

Pakistan Jounal of Biological Scienes. Vol: 8 No:12 . 2005 .PP:778-1782

13- Production of rosmarinic acid in Echiom amoenum Fisch. And C.A. mey. cell culture

Mitra Mehrbani; Mohammad Reza Shams Ardekani ; Alireza Ghannadi; Nasrollah Ghassemi; Ebrahim Sajjadi. Iranin jornal of phamaceutical research(2005). PP: 111-115

14- Effect of elicitors on the enhancemet of podophyllotoxin biosythesis in suspension cultune of  Linum albumL.

Mohammad Reza Shams Ardekani; Shiva Hemmati ; Abdolali Mohagheghzadeh ; DARU, Vol:13  No:2  .  2005  .  PP:56-60

15-A Research conducted on the life and works of Hakim Sayyid Esmail Jurjani ; His life and books

Mohammad Reza Shams Ardekani, Fariborz Moattar , Jornal of History of  Islamic Medicine, vol.4, No.7 .2005

16-Pharmaceutical potentials of Iranian traditional pharmacy (ITP). In''Bioactive Natural Products'' book series. Abolhassanzadeh Z ; Mohagheghzadeh A; Faridi P ; Mohammad Reza Shams Ardekani ; Gholami A ; Ghasemi Y.  (2006) J.Ethnopharmacol. 108:161-184

17-Volatile constituents of matricaria chamomilla L. from Isfahan. Iran. Mohammad Reza Shams Ardekani- Alireza Ghannadi- Azadeh Rahimzadeh. Iranian Journal of Pharmaceutcal Sciences , 2006

18- Medicinal smokes. Abdolali Mohagheghzadeh; Pouya Faridi; Mohammad Reza Shams Ardekani; Younes Ghasemi. Journal of Ethnopharmacology. 108(2):161-184(2006)

19- Volatile constituents of callus and flower bearing tops of  Zataria multiflora Boiss. (Lamiaceae), Abdolali Mohagheghzadeh,  Mohammad Reza Shams Ardekan, A. Ghannadi., Flavour and Fragrance Journal, 15 , 373-6 (2006)

20- Comparison of the volatile oils obtained by different distillation conditions of Iranian Foeniculum Vulgare Mill. Amir hossein Jamshidi ; Mohammad Reza Shams Ardekan; Abbas Hadjiakhoondi. Hamdard Medicus. 2007

21- Formation of glycyrrhizin by in vitro cultures of glycyrrhiza glabra. M.R. Shams Ardekani- A. Mohagheghzadeh- A. Ghannadi- A. Barati- Chemistry of Natural Compounds. Vol. 43, No.3, 2007

22- Biotransformation of monoterpenoids by suspension cultures of Lavandula Angustifolia ; Mohammad Reza Shams Ardekani ; Peter A Linley ; Keith J Harkiss ; Abdolali Mohagheghzadeh ; Azra Gholami ; Mahmood Mosaddegh. Iranian Journal of Pharmaceutical Sciences. No. 2006- Mar 2007

23-Root culture of Linum species section syllinum as rich sources of 6-metoxypodophyllotoxin

Abdolali Mohagheghzadeh ; Azra Gholumi ; Shiva Hemti ; Mohammad Reza Shams Ardekani ; Thomas J.schmidt and A Wilhelm Alfermann. Z.Naturforschung. No:62 c, (2007) PP:43-49

24- The Effect of fenugreed 4-Hydroxyisoleucine of liver funcition biomarkers and glucose in diabetic and fructose- fed rats. M.R. Haeri; M. Izaddoost; M.R. Shams Ardekani; M.Rahbani Nobar; Kenneth N. White. Iranian Journal of Phytothecopy Sciences. 2008

25- Flavonolignan production in cell Suspension culture of silybum marianum. T.Hasanloo; R.A.Khavari-Nejad; E.Majidi; M.R.Shams Ardekani. Pharmaceutical Biology. 2008- Vol.46- No.12- pp.876-882.

26- Comparative antioxidant activity and total Flavonoid content of Persian pomegranate (Punica granatum L.) cultivars. M.Hajimahmoodi. A.M.Ranjbar. M.R.Oveisi. N.Sadegi. B.Jannat. N.Gholam. T.Moridi. M.R.Shams Ardekani. Iranian Journal.

27- Comparison of antioxidant activity and total phenol content of some date seed varieties from Iran

Mahnaz Khanavi. Mannan Hajimahmoodi. Maryam Jahangiri. Mohammad Reza Shams Ardekani and Abbas Hajikhoondi. Iranian Journal of pharmaceutical research. In Press.

28- The Traditional Iranian Medicine Point of View of Health and Disease - H.Rezaeizadeh , M. Alizadeh, M. Naseri , M.R.Shams Ardekani - Iranian Journal Publ Health . Vol. 38 - 2009

29- Cytotoxic activity of Persian Gulf marine algae- M.Khanavi, M.Nabavi, N.Sadati, M.R.Shams Ardekani , J.Sohrabipour, S.M.B.Nabavi, S.N.Ostad - Biological Research -In press

30- The Essential Oil composition of Ajuga chamaecistus Ging.subsp. tomentella Rech.f. - M.R.Shams Ardekani ,M.Khanavi. P.Taheri. N.Samadi. E.Safaripour. F.Salimpour - Journal of Essential Oil Bearing Plants

2010.